Optimization of Potent ATAD2 and CECR2 Bromodomain Inhibitors with an Atypical Binding Mode

J Med Chem. 2020 May 28;63(10):5212-5241. doi: 10.1021/acs.jmedchem.0c00021. Epub 2020 May 6.

Abstract

Most bromodomain inhibitors mimic the interactions of the natural acetylated lysine (KAc) histone substrate through key interactions with conserved asparagine and tyrosine residues within the binding pocket. Herein we report the optimization of a series of phenyl sulfonamides that exhibit a novel mode of binding to non-bromodomain and extra terminal domain (non-BET) bromodomains through displacement of a normally conserved network of four water molecules. Starting from an initial hit molecule, we report its divergent optimization toward the ATPase family AAA domain containing 2 (ATAD2) and cat eye syndrome chromosome region, candidate 2 (CECR2) domains. This work concludes with the identification of (R)-55 (GSK232), a highly selective, cellularly penetrant CECR2 inhibitor with excellent physicochemical properties.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • ATPases Associated with Diverse Cellular Activities / antagonists & inhibitors*
  • ATPases Associated with Diverse Cellular Activities / metabolism*
  • DNA-Binding Proteins / antagonists & inhibitors*
  • DNA-Binding Proteins / metabolism*
  • HEK293 Cells
  • Humans
  • Protein Binding / physiology
  • Protein Domains / drug effects
  • Protein Domains / physiology
  • Protein Structure, Secondary
  • Sulfonamides / chemistry
  • Sulfonamides / metabolism*
  • Sulfonamides / pharmacology
  • Transcription Factors / antagonists & inhibitors*
  • Transcription Factors / metabolism*

Substances

  • Cecr2 protein, human
  • DNA-Binding Proteins
  • Sulfonamides
  • Transcription Factors
  • ATAD2 protein, human
  • ATPases Associated with Diverse Cellular Activities